6LIU
Crystal structure of apo Tyrosine decarboxylase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2016-06-28 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 118.043, 180.864, 217.159 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.130 - 2.800 |
R-factor | 0.2434 |
Rwork | 0.241 |
R-free | 0.27960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1js3 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.716 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.970 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmeas | 0.221 | 0.980 |
Number of reflections | 114951 | 18254 |
<I/σ(I)> | 7.37 | 2.07 |
Completeness [%] | 99.9 | 99.4 |
Redundancy | 7.4 | 7.6 |
CC(1/2) | 0.992 | 0.816 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | sodium malonate, HEPES, Jeffamine ED-2001 |