6LEG
Structure of E. coli beta-glucuronidase complex with uronic isofagomine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2017-10-24 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 207.527, 75.926, 168.281 |
Unit cell angles | 90.00, 96.79, 90.00 |
Refinement procedure
Resolution | 29.792 - 2.603 |
R-factor | 0.2333 |
Rwork | 0.232 |
R-free | 0.28790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k46 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.029 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.690 |
High resolution limit [Å] | 2.600 | 5.590 | 2.600 |
Rmerge | 0.159 | 0.037 | 0.760 |
Rmeas | 0.179 | 0.043 | 0.897 |
Rpim | 0.080 | 0.021 | 0.468 |
Total number of observations | 362631 | ||
Number of reflections | 79253 | 8139 | 7489 |
<I/σ(I)> | 6.4 | ||
Completeness [%] | 99.2 | 99 | 94.7 |
Redundancy | 4.6 | 4.6 | 2.9 |
CC(1/2) | 0.998 | 0.791 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | MgCl2, 0.1 M Tris-HCl, pH 8.5 and 21% PEG4K |