6LAS
the wildtype SAM-VI riboswitch bound to SAM
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2018-06-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 56.417, 84.214, 90.484 |
Unit cell angles | 90.00, 105.79, 90.00 |
Refinement procedure
Resolution | 39.631 - 2.708 |
R-factor | 0.2083 |
Rwork | 0.206 |
R-free | 0.24390 |
Structure solution method | SAD |
RMSD bond length | 0.008 |
RMSD bond angle | 1.206 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 2.750 |
High resolution limit [Å] | 2.700 | 7.310 | 2.700 |
Rmerge | 0.135 | 0.079 | 1.032 |
Rmeas | 0.146 | 0.085 | 1.117 |
Rpim | 0.056 | 0.033 | 0.423 |
Total number of observations | 149872 | ||
Number of reflections | 22210 | 1156 | 1097 |
<I/σ(I)> | 3.6 | ||
Completeness [%] | 99.7 | 99.5 | 99.9 |
Redundancy | 6.7 | 6.2 | 6.8 |
CC(1/2) | 0.997 | 0.682 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.1 M sodium acetate trihydrate pH 4.6, 10% w/v polyethylene glycol 4,000 |