6L5N
Crystal structure of human DEAD-box RNA helicase DDX21 at post-unwound state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-11 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97849 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 72.360, 89.230, 79.690 |
Unit cell angles | 90.00, 115.60, 90.00 |
Refinement procedure
Resolution | 33.520 - 2.242 |
R-factor | 0.1781 |
Rwork | 0.175 |
R-free | 0.23300 |
Structure solution method | SAD |
Data reduction software | HKL-2000 |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 71.867 | 39.505 | 2.360 |
High resolution limit [Å] | 2.242 | 7.090 | 2.242 |
Rmerge | 0.065 | 0.449 | |
Rmeas | 0.111 | 0.085 | 0.533 |
Rpim | 0.044 | 0.034 | 0.207 |
Total number of observations | 276183 | ||
Number of reflections | 43794 | 1427 | 6378 |
<I/σ(I)> | 11.6 | 7.4 | 1.6 |
Completeness [%] | 99.7 | 98.8 | 99.9 |
Redundancy | 6.3 | 6.2 | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 7% MPD and 0.1M Bicine, pH8.5 |