6KYE
The crystal structure of recombinant human adult hemoglobin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 123.031, 55.947, 133.156 |
Unit cell angles | 90.00, 98.27, 90.00 |
Refinement procedure
Resolution | 48.420 - 2.280 |
R-factor | 0.2281 |
Rwork | 0.226 |
R-free | 0.26770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dn3 |
RMSD bond length | 0.004 |
RMSD bond angle | 1.337 |
Data reduction software | XDS (Mar 15, 2019) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.460 | 48.420 | 2.330 |
High resolution limit [Å] | 2.280 | 11.640 | 2.280 |
Rmerge | 0.140 | 0.045 | 1.629 |
Rmeas | 0.170 | 0.055 | 1.984 |
Rpim | 0.095 | 0.032 | 1.116 |
Total number of observations | 1637 | 12565 | |
Number of reflections | 80208 | 620 | 4394 |
<I/σ(I)> | 5.4 | 19.9 | 0.7 |
Completeness [%] | 97.6 | 89.8 | 93.6 |
Redundancy | 2.9 | 2.6 | 2.9 |
CC(1/2) | 0.993 | 0.994 | 0.338 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIQUID DIFFUSION | 6 | 293 | NaCl, PEG3350, MES |