6KMJ
Crystal structure of Sth1 bromodomain in complex with H3K14Ac
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-02 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9779 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 23.943, 61.933, 153.151 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.708 - 1.400 |
R-factor | 0.166 |
Rwork | 0.165 |
R-free | 0.18840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2grc |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.420 |
High resolution limit [Å] | 1.400 | 3.800 | 1.400 |
Rmerge | 0.136 | 0.093 | 0.663 |
Rmeas | 0.146 | 0.100 | 0.701 |
Rpim | 0.052 | 0.036 | 0.221 |
Total number of observations | 179344 | ||
Number of reflections | 21820 | 1290 | 1021 |
<I/σ(I)> | 5.5 | ||
Completeness [%] | 94.3 | 99.2 | 92.4 |
Redundancy | 8.2 | 7.6 | 9.1 |
CC(1/2) | 0.994 | 0.861 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 1% w/v tryptone, 1 mM sodium azide, 50 mM HEPES sodium pH 7.0, 20% w/v PEG 3350 |