6KGB
Crystal structure of E61K mutated transthyretin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 42.538, 85.597, 64.419 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.799 - 1.300 |
R-factor | 0.1617 |
Rwork | 0.161 |
R-free | 0.17670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4pwe |
RMSD bond length | 0.004 |
RMSD bond angle | 0.716 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12-2829_1069) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.822 | 1.350 |
High resolution limit [Å] | 1.300 | 1.300 |
Rmeas | 0.029 | 0.849 |
Rpim | 0.011 | 0.328 |
Number of reflections | 58603 | 37155 |
<I/σ(I)> | 29.5 | 2.5 |
Completeness [%] | 99.9 | 99.4 |
Redundancy | 6.5 | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 27% PEG400, 0.2 M CaCl2, 0.1 M MES-NaOH pH 6.5 |