6KER
Crystal structure of D113A mutant of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in glutathione-bound form
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-29 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.10000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 58.371, 74.834, 107.423 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.030 - 1.840 |
R-factor | 0.1908 |
Rwork | 0.189 |
R-free | 0.22080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6kem |
RMSD bond length | 0.004 |
RMSD bond angle | 0.660 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.10.1_2155,1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.340 | 1.904 |
High resolution limit [Å] | 1.838 | 1.838 |
Rmerge | 0.113 | 1.124 |
Rmeas | 0.117 | 1.166 |
Rpim | 0.032 | 0.309 |
Number of reflections | 41679 | 4083 |
<I/σ(I)> | 15.24 | 2.12 |
Completeness [%] | 99.9 | 99.51 |
Redundancy | 13.5 | 13.9 |
CC(1/2) | 1.000 | 0.787 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.4 | 293 | 42.5%(v/v) PPG400, 100mM Bis-Tris, and pH 6.4 |