6K2D
The crystal structure of GBP1 with LRR domain of IpaH9.8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-05 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 211.736, 211.736, 56.975 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.392 - 3.600 |
R-factor | 0.2429 |
Rwork | 0.240 |
R-free | 0.28720 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.542 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.660 |
High resolution limit [Å] | 3.600 | 9.750 | 3.600 |
Rmerge | 0.196 | 0.139 | 2.895 |
Rmeas | 0.208 | 0.148 | 3.062 |
Rpim | 0.068 | 0.050 | 0.992 |
Total number of observations | 169472 | ||
Number of reflections | 17259 | 920 | 844 |
<I/σ(I)> | 7.7 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 9.8 | 9.5 | 9.4 |
CC(1/2) | 0.970 | 0.706 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 1.6M Sodium/potassium phosphate pH 6.5 |