6JVJ
Crystal structure of human MTH1 in complex with compound MI1006
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-10-02 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.017, 67.491, 79.258 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.708 - 2.297 |
R-factor | 0.1969 |
Rwork | 0.190 |
R-free | 0.25850 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.107 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.380 |
High resolution limit [Å] | 2.300 | 4.950 | 2.300 |
Rmerge | 0.052 | 0.036 | 0.157 |
Rmeas | 0.059 | 0.041 | 0.176 |
Rpim | 0.027 | 0.019 | 0.078 |
Total number of observations | 68401 | ||
Number of reflections | 14570 | 1561 | 1425 |
<I/σ(I)> | 19.5 | ||
Completeness [%] | 99.3 | 98.5 | 100 |
Redundancy | 4.7 | 4.3 | 4.9 |
CC(1/2) | 0.998 | 0.985 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 3.75 | 298 | 30% PEG6000, 200 mM Lithium sulphate, 100 mM Sodium acetate pH 3.75 |