6JN3
Serine Beta-Lactamase KPC-2 in Complex with Dual MBL/SBL Inhibitor MS05
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 195 |
Detector technology | PIXEL |
Collection date | 2018-06-01 |
Detector | DECTRIS PILATUS3 X CdTe 1M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 165.515, 165.515, 94.681 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.780 - 2.216 |
R-factor | 0.1675 |
Rwork | 0.167 |
R-free | 0.20110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5eec |
RMSD bond length | 0.012 |
RMSD bond angle | 1.241 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.810 |
High resolution limit [Å] | 1.780 | 4.830 | 1.780 |
Rmerge | 0.225 | 0.176 | |
Rmeas | 0.231 | 0.180 | |
Rpim | 0.059 | 0.040 | 0.780 |
Total number of observations | 2388937 | ||
Number of reflections | 192362 | 7392 | 4531 |
<I/σ(I)> | 3.4 | ||
Completeness [%] | 96.7 | 100 | 64.5 |
Redundancy | 17.4 | 20.5 | 5.8 |
CC(1/2) | 0.971 | 0.164 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 293 | 32-35% PEG 8000, 0.1M lithium sulphate, 0.05M sodium acetate (pH 4.5) |