6IRY
Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.379, 82.288, 92.811 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.623 - 1.800 |
R-factor | 0.1802 |
Rwork | 0.179 |
R-free | 0.20340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6irx |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.2) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.623 | 46.620 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.040 | 0.046 | 0.587 |
Rmeas | 0.044 | 0.050 | 0.635 |
Rpim | 0.017 | 0.019 | 0.241 |
Number of reflections | 51421 | 484 | 3019 |
<I/σ(I)> | 21.2 | ||
Completeness [%] | 100.0 | 99.5 | 100 |
Redundancy | 6.7 | 6.1 | 6.8 |
CC(1/2) | 0.999 | 0.997 | 0.938 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 13% PEG 3350, 0.1M potassium thiocyanate, 0.1M bis-Tris propane |