6I80
Crystal Structure of the second bromodomain of BRD2 in complex with RT53
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 64.409, 66.720, 129.613 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.660 - 1.140 |
R-factor | 0.1312 |
Rwork | 0.131 |
R-free | 0.14300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3oni |
RMSD bond length | 0.016 |
RMSD bond angle | 1.757 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.661 | 29.661 | 1.200 |
High resolution limit [Å] | 1.138 | 3.600 | 1.140 |
Rmerge | 0.029 | 0.435 | |
Rmeas | 0.047 | 0.031 | 0.511 |
Rpim | 0.019 | 0.012 | 0.264 |
Total number of observations | 570519 | ||
Number of reflections | 101581 | 3447 | 14271 |
<I/σ(I)> | 16.1 | 18.2 | 1.8 |
Completeness [%] | 99.5 | 99.7 | 96.9 |
Redundancy | 5.6 | 6.2 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 30% PEG1000 0.1M MMT pH 7.0 |