6I7R
Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the P43212 form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-03 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97950 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 61.460, 61.460, 261.815 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.454 - 1.949 |
R-factor | 0.1745 |
Rwork | 0.173 |
R-free | 0.20300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1lqb |
RMSD bond length | 0.007 |
RMSD bond angle | 1.023 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 262.010 | 2.060 |
High resolution limit [Å] | 1.949 | 1.949 |
Rmerge | 0.175 | 1.945 |
Rmeas | 0.178 | 1.985 |
Rpim | 0.035 | 0.393 |
Number of reflections | 38067 | 5457 |
<I/σ(I)> | 14 | 2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 24.9 | 25.2 |
CC(1/2) | 0.999 | 0.727 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.8 | 293 | 0.1M Cacodyl-Na pH 5.8, 0.1M Mg Formate, 50mM Cystamine, 22% PEG3350 |