6I5Y
Crystal structure of E. coli tyrRS in complex with 5'-O-(N-L-tyrosyl)sulfamoyl-adenosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-09 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.979292 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.393, 66.508, 91.710 |
Unit cell angles | 90.00, 101.73, 90.00 |
Refinement procedure
Resolution | 79.690 - 1.900 |
R-factor | 0.194 |
Rwork | 0.193 |
R-free | 0.22700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4oud |
RMSD bond length | 0.010 |
RMSD bond angle | 0.950 |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.2) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 79.700 | 79.700 | 1.900 |
High resolution limit [Å] | 1.800 | 5.690 | 1.800 |
Rmerge | 0.067 | 0.049 | 0.878 |
Rmeas | 0.079 | 0.058 | 1.029 |
Rpim | 0.042 | 0.030 | 0.534 |
Number of reflections | 87607 | 2922 | 12620 |
<I/σ(I)> | 8.4 | ||
Completeness [%] | 98.5 | 99.3 | 97.7 |
Redundancy | 3.5 | 3.5 | 3.6 |
CC(1/2) | 0.997 | 0.995 | 0.746 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | Holo enzyme crystals were grown in 0.1 M BIS-TRIS pH 6.5, 10-15% PEG 3350, 20 mM glutamate pH 6 (1M stock solution adjusted to pH 5) and 20% (v/v) ethylene glycol. For soaking crystals were transferred to a drop containing mother liquor supplemented with 2 mM inhibitor. |