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6I3C

Crystal structure of Human soluble catechol O-methyltransferase in complex with 3,5-dinitrocatechol and S-adensoyl-L-methionine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-09-10
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9282
Spacegroup nameP 1 21 1
Unit cell lengths43.694, 61.749, 46.071
Unit cell angles90.00, 116.42, 90.00
Refinement procedure
Resolution39.130 - 1.336
R-factor0.1355
Rwork0.134
R-free0.17020
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)inhouse
RMSD bond length0.018
RMSD bond angle1.270
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX ((dev_3304: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]39.1301.384
High resolution limit [Å]1.3361.336
Rmerge0.0810.360
Rmeas0.0970.450
Rpim0.0530.270
Number of reflections494634891
<I/σ(I)>8.252.06
Completeness [%]99.599.15
Redundancy3.22.5
CC(1/2)0.9940.824
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.42770.2M 1,6-Hexanediol; 0.2M 1-Butanol; 0.2M 1,2-Propanediol; 0.2M 2-Propanol; 0.2M 1,4-Butanediol; 0.2M 1,3-Propanediol), 0.1M Imidazole; MES monohydrate (acid) pH 6.5, 50% v/v pre-cipitant mix (25% v/v MPD; 25% PEG 1000; 25% PEG 3350) Morpheus condition D4

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PDB entries from 2024-07-17

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