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6HMD

STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA'; CSNK2A2 gene product) IN COMPLEX WITH THE INDENOINDOLE-TYPE INHIBITOR AR18

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM30A
Synchrotron siteESRF
BeamlineBM30A
Temperature [K]100
Detector technologyCCD
Collection date2017-11-23
DetectorADSC QUANTUM 315r
Wavelength(s)0.920042
Spacegroup nameP 1
Unit cell lengths44.890, 45.820, 48.520
Unit cell angles113.02, 89.21, 91.18
Refinement procedure
Resolution22.327 - 1.000
R-factor0.1496
Rwork0.149
R-free0.17180
Structure solution methodAB INITIO PHASING
RMSD bond length0.022
RMSD bond angle1.317
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareArcimboldo
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.8801.036
High resolution limit [Å]1.0001.000
Rmerge0.0471.028
Rmeas0.0551.189
Rpim0.0280.597
Number of reflections17735917032
<I/σ(I)>15.671.36
Completeness [%]92.288.55
Redundancy3.94
CC(1/2)0.9990.557
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293.15180 MICROLITER ENZYME STOCK SOLUTION (6 MG/ML IN 500 MM NACL, 25 MM TRIS/HCL, PH 8.5) WAS MIXED and incubated WITH 20 MIKROLITER of a STOCK SOLUTION of the inhibitor 4B0 (10 MM 4B0 IN DMSO). 20 MICROLITERS OF the resulting solution WAS MIXED WITH 10 MICROLITERS OF RESERVOIR SOLUTION (700 MM LICL, 28 % (W/V) PEG 6000, 100 MM TRIS/HCL, PH 8.5) IN EACH WELL OF A CRYSTALLIZATION PLATE. A SINGLE MACROSEED, grown UNDER THE SAME CONDITIONS, WAS ADDED TO EACH DROPLET of the plate. THE DROPLETS WERE EQUILIBRATED AT 293.15 K using the sitting drop variant of the VAPOR DIFFUSION method. This procedure generated large single crystals of a CK2alpha'/4B0 complex. Afterwards, the inhibitor 4B0 was exchanged against AR18 by an extensive soaking procedure of several steps.

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