6HHH
Crystal Structure of AKT1 in Complex with Covalent-Allosteric AKT Inhibitor 31
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.99992 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.320, 70.890, 91.080 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.540 - 2.700 |
R-factor | 0.217 |
Rwork | 0.214 |
R-free | 0.26570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hhg |
RMSD bond length | 0.005 |
RMSD bond angle | 0.787 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.540 | 2.800 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.074 | 0.997 |
Rmeas | 0.075 | 0.997 |
Number of reflections | 13005 | 1303 |
<I/σ(I)> | 24.48 | 2.77 |
Completeness [%] | 100.0 | 99.8 |
Redundancy | 13 | 13.8 |
CC(1/2) | 1.000 | 0.921 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 1.25 mM Na-acetate, 3.75 mM Na-citrate, 15% v/v PEG 2000 MME, pH 7.5, 3 mg/mL Akt1, (in 25 mM TRIS, 100 mM NaCl, 10 % Glycerol, 5 mM DTT, pH 7.5), 1ul reservoir + 1ul protein solution |