6H6M
CR10 murine norovirus protruding domain in complex with the CD300lf receptor and glycochenodeoxycholate (GCDCA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.974720 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 75.940, 137.550, 93.800 |
Unit cell angles | 90.00, 95.84, 90.00 |
Refinement procedure
Resolution | 46.660 - 2.380 |
R-factor | 0.1881 |
Rwork | 0.186 |
R-free | 0.22490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5or7 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.643 |
Data reduction software | XDS (VERSION Nov 1, 2016) |
Data scaling software | XSCALE (VERSION Nov 1, 2016) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.660 | 2.470 |
High resolution limit [Å] | 2.380 | 2.380 |
Rmerge | 0.107 | 0.539 |
Rmeas | 0.127 | 0.643 |
Rpim | 0.068 | 0.347 |
Number of reflections | 75003 | 6866 |
<I/σ(I)> | 8.74 | 2 |
Completeness [%] | 97.9 | 89.99 |
Redundancy | 3.4 | 3.3 |
CC(1/2) | 0.993 | 0.794 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M Citric Acid pH 4.0, 30%(w/v) PEG 6000 |