6GXX
Fab fragment of an antibody selective for alpha-1-antitrypsin in the native conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-11 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.99998 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 54.103, 85.257, 89.427 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.080 - 1.850 |
R-factor | 0.1878 |
Rwork | 0.186 |
R-free | 0.22290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mf2 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.637 |
Data reduction software | XDS (20171218) |
Data scaling software | Aimless (v0.6.2) |
Phasing software | PHASER (v2.8.1) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.810 | 29.810 | 1.890 |
High resolution limit [Å] | 1.850 | 9.080 | 1.850 |
Rmerge | 0.133 | ||
Rmeas | 0.139 | 0.069 | 0.783 |
Rpim | 0.039 | 0.020 | 0.227 |
Number of reflections | 34148 | 356 | 2116 |
<I/σ(I)> | 15.3 | 31.9 | 4 |
Completeness [%] | 94.9 | 97.2 | 98.1 |
Redundancy | 12.6 | 10.5 | 11.7 |
CC(1/2) | 0.998 | 0.999 | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 289 | 20% PEG 3350, 0.1M Hepes, 0.05M magnesium chloride |