6GPR
Structure of human Heat shock protein 90-alpha N-terminal domain (Hsp90-NTD) in complex with cAMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97623 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.502, 44.346, 54.023 |
Unit cell angles | 90.00, 115.60, 90.00 |
Refinement procedure
Resolution | 48.720 - 2.350 |
R-factor | 0.22639 |
Rwork | 0.223 |
R-free | 0.28580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xk2 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.771 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.720 | 2.480 |
High resolution limit [Å] | 2.350 | 2.350 |
Rmerge | 0.144 | 0.340 |
Rmeas | 0.170 | 0.398 |
Rpim | 0.089 | 0.205 |
Number of reflections | 9680 | 1400 |
<I/σ(I)> | 6.6 | 3.9 |
Completeness [%] | 99.8 | 99.7 |
Redundancy | 3.7 | 3.8 |
CC(1/2) | 0.962 | 0.874 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | Precipitant: 25 % wt/vol PEG 2000, 200mM MgCl2, 100 mM sodium cacodylate, pH 6.5 Sample: Hsp90a-NTD 20 mg/mL, 10 mM cAMP, 500 mM NaCl, 20 mM TRIS, pH 7.5 |