6GIA
Crystal structure of pentaerythritol tetranitrate reductase (PETNR) mutant I107A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.92 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.872, 69.139, 88.894 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.390 - 1.700 |
R-factor | 0.1407 |
Rwork | 0.137 |
R-free | 0.20710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2aba |
RMSD bond length | 0.016 |
RMSD bond angle | 1.382 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.390 | 1.761 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.059 | 0.410 |
Rmeas | 0.071 | 0.488 |
Rpim | 0.038 | 0.258 |
Number of reflections | 39076 | 3865 |
<I/σ(I)> | 14.92 | 3.54 |
Completeness [%] | 99.4 | 99.41 |
Redundancy | 3.5 | 3.4 |
CC(1/2) | 0.990 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 294 | 25 % (w/v) PEG 3000, 17 % (v/v) isopropanol, 0.1 M trisodium citrate, 0.1 M cacodylic acid (pH 6.5) |