6GBW
Thrombin in complex with MI2100 ((S)-N-(2-(aminomethyl)-5-chlorobenzyl)-1-((benzylsulfonyl)-L-arginyl)pyrrolidine-2-carboxamide)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-05-03 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 0.9184 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 69.840, 71.119, 72.858 |
Unit cell angles | 90.00, 100.58, 90.00 |
Refinement procedure
Resolution | 21.784 - 1.450 |
R-factor | 0.1335 |
Rwork | 0.132 |
R-free | 0.16450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1h8d |
RMSD bond length | 0.008 |
RMSD bond angle | 0.995 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.431 | 1.540 |
High resolution limit [Å] | 1.450 | 1.450 |
Number of reflections | 61523 | 9827 |
<I/σ(I)> | 15.41 | 2.34 |
Completeness [%] | 99.0 | 97.9 |
Redundancy | 3.4 | 3.5 |
CC(1/2) | 1.000 | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | 20 mM sodium dihydrogen phosphate ph 7.5 350 mM NaCl 27% PEG 8000 |