Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GBW

Thrombin in complex with MI2100 ((S)-N-(2-(aminomethyl)-5-chlorobenzyl)-1-((benzylsulfonyl)-L-arginyl)pyrrolidine-2-carboxamide)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2017-05-03
DetectorMAR scanner 345 mm plate
Wavelength(s)0.9184
Spacegroup nameC 1 2 1
Unit cell lengths69.840, 71.119, 72.858
Unit cell angles90.00, 100.58, 90.00
Refinement procedure
Resolution21.784 - 1.450
R-factor0.1335
Rwork0.132
R-free0.16450
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1h8d
RMSD bond length0.008
RMSD bond angle0.995
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.4311.540
High resolution limit [Å]1.4501.450
Number of reflections615239827
<I/σ(I)>15.412.34
Completeness [%]99.097.9
Redundancy3.43.5
CC(1/2)1.0000.810
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP727720 mM sodium dihydrogen phosphate ph 7.5 350 mM NaCl 27% PEG 8000

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon