6FWQ
Structure of an E333Q variant of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with alpha-1,3-mannobiose and alpha-1,2-mannobiose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-19 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9282 |
Spacegroup name | I 4 |
Unit cell lengths | 108.651, 108.651, 68.813 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 76.830 - 1.650 |
R-factor | 0.14846 |
Rwork | 0.146 |
R-free | 0.18875 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5m17 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.411 |
Data reduction software | xia2 (0.4.0.342-ge8fbd7c-dials-1.2) |
Data scaling software | Aimless (0.5.26) |
Phasing software | REFMAC (5.8.0158) |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 76.830 | 1.680 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.084 | 1.014 |
Rmeas | 0.097 | 1.171 |
Rpim | 0.047 | 0.578 |
Number of reflections | 47947 | 2336 |
<I/σ(I)> | 8.2 | 1.1 |
Completeness [%] | 99.6 | 99.8 |
Redundancy | 4 | 4.1 |
CC(1/2) | 0.995 | 0.406 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.8 | 292 | 3 M sodium acetate, pH 6.8 |