6FWG
Structure of an E333Q variant of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with tetramannoside yeast mannan fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-06 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9796 |
Spacegroup name | I 4 |
Unit cell lengths | 107.873, 107.873, 67.626 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 76.280 - 1.070 |
R-factor | 0.12097 |
Rwork | 0.120 |
R-free | 0.13814 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5m17 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.539 |
Data reduction software | DIALS (1.0-41-g27d87d8) |
Data scaling software | Aimless (0.5.23) |
Phasing software | REFMAC (5.8.0135) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 76.280 | 1.090 |
High resolution limit [Å] | 1.070 | 1.070 |
Rmerge | 0.061 | 1.531 |
Rmeas | 0.067 | 1.692 |
Rpim | 0.026 | 0.705 |
Number of reflections | 170023 | 8334 |
<I/σ(I)> | 10.6 | 1 |
Completeness [%] | 100.0 | 99.3 |
Redundancy | 6.3 | 5.5 |
CC(1/2) | 0.997 | 0.398 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292 | 3M sodium acetate, pH 7.4 |