6FVL
DNA polymerase sliding clamp from Escherichia coli with bound P7 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-26 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 |
Unit cell lengths | 72.900, 79.480, 85.317 |
Unit cell angles | 65.83, 75.16, 75.79 |
Refinement procedure
Resolution | 57.055 - 1.975 |
R-factor | 0.191 |
Rwork | 0.189 |
R-free | 0.23320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ok7 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.026 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 57.055 | 57.055 | 2.010 |
High resolution limit [Å] | 1.975 | 5.361 | 1.975 |
Rmerge | 0.089 | 0.031 | 0.706 |
Rmeas | 0.105 | 0.037 | 0.993 |
Rpim | 0.055 | 0.027 | 0.697 |
Number of reflections | 76533 | 5808 | 192 |
<I/σ(I)> | 11 | 32.6 | 1.1 |
Completeness [%] | 87.6 | 99.2 | 25.9 |
Redundancy | 3.5 | 3.5 | |
CC(1/2) | 0.997 | 0.999 | 0.234 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | MES 50mM pH 6, CaCl2 50mM PEG400 30% (1 microliter) + Hampton Research PEG Ion kit E6 (1 microliter): 0.2M sodium malonate pH6, 20% PEG 3350 |