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6FS6

Influenza A/California/04/2009 (pH1N1) endonuclease with bound inhibitor, baloxavir acid (BXA)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-3
Synchrotron siteESRF
BeamlineMASSIF-3
Temperature [K]100
Detector technologyPIXEL
Collection date2017-11-23
DetectorDECTRIS EIGER R 4M
Wavelength(s)0.9677
Spacegroup nameP 21 21 2
Unit cell lengths135.180, 75.690, 121.590
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution90.401 - 2.291
R-factor0.1953
Rwork0.193
R-free0.23060
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB:4AWK
RMSD bond length0.004
RMSD bond angle0.847
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((1.12_2829: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]90.4012.340
High resolution limit [Å]2.2902.290
Rmerge0.908
Number of reflections595504199
<I/σ(I)>14.82.2
Completeness [%]99.9100
Redundancy6.97.2
CC(1/2)0.9990.770
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5293Protein, at 15-17 mg/ml, was incubated with 10-fold molar excess of BXA for 30 min at RT, mixtures were centrifuged at RT for 5 minutes at 12000 g, and soluble fraction was used for crystallization trials (final protein concentration 8-10 mg/ml). Mother liquor was 0.3 M (NH4)2SO4, 0.1 M ADA pH 6.5, 28% (w/v) PEG8000

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