6FRM
Crystal Structure of coenzyme F420H2 oxidase (FprA) co-crystallized with 10 mM Tb-Xo4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-27 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.07227 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 84.170, 147.875, 146.059 |
Unit cell angles | 90.00, 90.40, 90.00 |
Refinement procedure
Resolution | 48.690 - 2.200 |
R-factor | 0.178 |
Rwork | 0.177 |
R-free | 0.20900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ohh |
RMSD bond length | 0.010 |
RMSD bond angle | 1.160 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.690 | 2.310 |
High resolution limit [Å] | 2.190 | 2.190 |
Rpim | 0.044 | 0.534 |
Number of reflections | 181493 | |
<I/σ(I)> | 9 | |
Completeness [%] | 99.0 | |
Redundancy | 6.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | FprA native (about 90 % pure) at 43 g/l + 10 mM Xo4, crystallized at 291 K under anaerobic condition (95% N2 / 5% H2) in Combiclover Junior plate from Jena Bioscience. The protein was crystallized by mixing 1 ul protein of this mix with 1 ul of the mother liquor containing 20% w/v PEG 8000, 100 mM HEPES pH 7.5, 200 mM Ammonium sulfate and 10 % v/v 2-propanol. Prior to freezing in liquid nitrogen, the crystal was soaked for few seconds in a cryo-protected solution containing: 20% w/v PEG 8000, 100 mM HEPES pH 7.5, 200 mM Ammonium sulfate, 10 % v/v 2-propanol, 25 % v/v glycerol. |