Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6FRM

Crystal Structure of coenzyme F420H2 oxidase (FprA) co-crystallized with 10 mM Tb-Xo4

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2017-08-27
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.07227
Spacegroup nameP 1 21 1
Unit cell lengths84.170, 147.875, 146.059
Unit cell angles90.00, 90.40, 90.00
Refinement procedure
Resolution48.690 - 2.200
R-factor0.178
Rwork0.177
R-free0.20900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ohh
RMSD bond length0.010
RMSD bond angle1.160
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.6902.310
High resolution limit [Å]2.1902.190
Rpim0.0440.534
Number of reflections181493
<I/σ(I)>9
Completeness [%]99.0
Redundancy6.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291FprA native (about 90 % pure) at 43 g/l + 10 mM Xo4, crystallized at 291 K under anaerobic condition (95% N2 / 5% H2) in Combiclover Junior plate from Jena Bioscience. The protein was crystallized by mixing 1 ul protein of this mix with 1 ul of the mother liquor containing 20% w/v PEG 8000, 100 mM HEPES pH 7.5, 200 mM Ammonium sulfate and 10 % v/v 2-propanol. Prior to freezing in liquid nitrogen, the crystal was soaked for few seconds in a cryo-protected solution containing: 20% w/v PEG 8000, 100 mM HEPES pH 7.5, 200 mM Ammonium sulfate, 10 % v/v 2-propanol, 25 % v/v glycerol.

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon