6FQX
Plasmodium falciparum 6-phosphogluconate dehydrogenase in its apo form, in complex with its cofactor NADP+ and in complex with its substrate 6-phosphogluconate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-11-29 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1 |
Spacegroup name | P 65 |
Unit cell lengths | 134.450, 134.450, 406.050 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.528 - 2.800 |
R-factor | 0.1889 |
Rwork | 0.188 |
R-free | 0.24190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2w90 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.296 |
Data reduction software | XDS (2017) |
Data scaling software | XSCALE (2017) |
Phasing software | PHENIX ((dev_2645: ???)) |
Refinement software | PHENIX ((dev_2645: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.530 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.182 | |
Rmeas | 0.192 | |
Rpim | 0.060 | |
Number of reflections | 101295 | 9878 |
<I/σ(I)> | 12.3 | 0.89 |
Completeness [%] | 99.6 | 97 |
Redundancy | 10.3 | 8.6 |
CC(1/2) | 0.997 | 0.250 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 295 | 25% PEG 4,000, 15% glycerol, 0.085 M NaCitrat (pH 5.6), and 0.17 M Ammonium acetate |