6FKM
Drosophila Plexin A in complex with Semaphorin 1b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.072 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 130.940, 195.090, 124.840 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 76.864 - 2.960 |
R-factor | 0.1891 |
Rwork | 0.186 |
R-free | 0.24620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3oky 6fkk |
RMSD bond length | 0.005 |
RMSD bond angle | 0.755 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13rc2_2986: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 76.864 | 3.070 |
High resolution limit [Å] | 2.960 | 2.960 |
Rmerge | 0.174 | 0.634 |
Number of reflections | 31584 | |
<I/σ(I)> | 8.86 | |
Completeness [%] | 93.8 | |
Redundancy | 4.6 | |
CC(1/2) | 0.990 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.1 M HEPES (pH 7.0) and 8% (w/v) PEG 8000 |