6FIO
DDR1, 2-[1'-(1H-indazole-5-carbonyl)-4-methyl-2-oxospiro[indole-3,4'-piperidine]-1-yl]-N-(2,2,2-trifluoroethyl)acetamide, 1.990A, P6522, Rfree=27.7%
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-06-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 111.908, 111.908, 113.288 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.458 - 1.990 |
R-factor | 0.217 |
Rwork | 0.214 |
R-free | 0.27650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.007 |
RMSD bond angle | 1.007 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2067) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.460 | 2.090 |
High resolution limit [Å] | 1.990 | 1.990 |
Rmerge | 0.236 | 1.062 |
Rmeas | 0.327 | 0.029 |
Total number of observations | 557871 | |
Number of reflections | 29121 | 411 |
<I/σ(I)> | 8.65 | 0.47 |
Completeness [%] | 99.3 | 98.6 |
Redundancy | 19.09 | 18.38 |
CC(1/2) | 0.999 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 11.3 mg/mL protein in 20mM HEPES/NaOH pH7.5, 5mM DTT, 5% glycerol, 0.1M NaCl mixed 1.3:1 with 90mM MES/NaOH pH6.5, 0.18M potassium iodide, 0.2M Li2SO4, 22.5% PEG 4K |