6FEW
DDR1, 2-[8-(1H-indazole-5-carbonyl)-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]decan-3-yl]-N-methylacetamide, 1.440A, P1211, Rfree=24.1%
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-10-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 40.580, 62.051, 63.419 |
Unit cell angles | 90.00, 106.58, 90.00 |
Refinement procedure
Resolution | 43.420 - 1.440 |
R-factor | 0.2184 |
Rwork | 0.217 |
R-free | 0.24130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.007 |
RMSD bond angle | 1.089 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1803) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.420 | 1.530 |
High resolution limit [Å] | 1.440 | 1.440 |
Rmerge | 0.058 | 0.847 |
Rmeas | 0.066 | 0.015 |
Number of reflections | 53860 | 694 |
<I/σ(I)> | 9.34 | 0.65 |
Completeness [%] | 98.6 | 99.6 |
Redundancy | 3.26 | 3.36 |
CC(1/2) | 0.999 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 11.5 mg/mL protein in 20mM HEPES/NaOH pH7.5, 5mM DTT, 5% glycerol, 0.1M NaCl mixed 3:1 in 600 nL with 0.1M Ca acetate, 12% PEG 8K, 0.1M Na cacodylate pH5.5 |