6FBR
Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human MEp DR1 Response Element, pH 4.2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-13 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.2821 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 55.659, 55.659, 166.131 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.290 - 2.100 |
R-factor | 0.181 |
Rwork | 0.178 |
R-free | 0.23200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6fbq |
RMSD bond length | 0.010 |
RMSD bond angle | 1.060 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.290 | 46.290 | 2.120 |
High resolution limit [Å] | 2.000 | 5.960 | 2.000 |
Rmerge | 0.113 | 0.034 | 3.280 |
Rmeas | 0.127 | 0.039 | 3.732 |
Total number of observations | 87918 | ||
Number of reflections | 19015 | 896 | 1948 |
<I/σ(I)> | 8.79 | 34.41 | 0.39 |
Completeness [%] | 90.2 | 96.3 | 58.9 |
Redundancy | 4.624 | 4.064 | 4.18 |
CC(1/2) | 0.998 | 0.999 | 0.152 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 293 | 40% PEG 300, 0.1M sodium phosphate citrate pH 4.2 |