6F28
Crystal structure of the kainate receptor GluK3 ligand binding domain in complex with (S)-1-[2'-Amino-2'-carboxyethyl]-6-methyl-5,7-dihydropyrrolo[3,4-d]pyrimidin-2,4(1H,3H)-dione at resolution 2.4A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-05-14 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0000 |
Spacegroup name | P 2 2 21 |
Unit cell lengths | 131.039, 56.214, 87.189 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.374 - 2.400 |
R-factor | 0.1967 |
Rwork | 0.195 |
R-free | 0.22160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mh5 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.567 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.374 | 28.374 | 2.530 |
High resolution limit [Å] | 2.400 | 7.590 | 2.400 |
Rmerge | 0.030 | 0.395 | |
Rmeas | 0.059 | 0.035 | 0.447 |
Rpim | 0.027 | 0.017 | 0.209 |
Number of reflections | 25952 | 908 | 3749 |
<I/σ(I)> | 15.8 | 18.3 | 2 |
Completeness [%] | 99.9 | 97.7 | 100 |
Redundancy | 4.4 | 3.8 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.4 | 295 | 20% PEG3350, 0.1M BisTrisPropane pH 8.4, 0.2M sodium sulfate, 5 mM zinc acetate |