6EZT
Crystal structure of GH20 Exo beta-N-Acetylglucosaminidase D437A inactive mutant from Vibrio harveyi
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-09-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97889 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 89.420, 129.240, 98.360 |
Unit cell angles | 90.00, 112.20, 90.00 |
Refinement procedure
Resolution | 91.090 - 2.600 |
R-factor | 0.197 |
Rwork | 0.195 |
R-free | 0.23650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ezr |
RMSD bond length | 0.007 |
RMSD bond angle | 1.210 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 91.090 | 91.090 | 2.670 |
High resolution limit [Å] | 2.600 | 11.630 | 2.600 |
Rmerge | 0.125 | 0.075 | 0.775 |
Rmeas | 0.136 | 0.081 | 0.835 |
Number of reflections | 63617 | 735 | 4675 |
<I/σ(I)> | 9.7 | 20.27 | 2.18 |
Completeness [%] | 99.8 | 98 | 99.7 |
Redundancy | 6.861 | 6.796 | 7.102 |
CC(1/2) | 0.993 | 0.993 | 0.865 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 4.5 | 293 | 0.1 M sodium acetate pH 4.6, 1.4 M sodium malonate |