6ES3
Structure of CDX2-DNA(TCG)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-07 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9724 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 127.950, 46.490, 68.890 |
Unit cell angles | 90.00, 113.27, 90.00 |
Refinement procedure
Resolution | 43.230 - 2.570 |
R-factor | 0.2221 |
Rwork | 0.216 |
R-free | 0.27810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lty |
RMSD bond length | 0.017 |
RMSD bond angle | 2.053 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.230 | 43.230 | 2.240 |
High resolution limit [Å] | 2.180 | 9.760 | 2.180 |
Rmerge | 0.185 | 0.084 | 2.991 |
Rmeas | 0.191 | 0.087 | 3.273 |
Number of reflections | 19575 | 243 | 1388 |
<I/σ(I)> | 8.47 | 28.25 | 0.43 |
Completeness [%] | 99.6 | 98.8 | 97.8 |
Redundancy | 16.093 | 17.424 | 6.019 |
CC(1/2) | 0.998 | 0.998 | 0.107 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 19% PME 5000, 0.15 M potassium chloride, 0.1 M magnesium chloride, 8% PEG 400, 0.05M TRIS-buffer pH 8.0 |