6E8T
Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.105 |
Spacegroup name | H 3 |
Unit cell lengths | 91.945, 91.945, 161.691 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.970 - 2.900 |
R-factor | 0.1988 |
Rwork | 0.195 |
R-free | 0.23650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6e8s |
RMSD bond length | 0.006 |
RMSD bond angle | 1.370 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.970 | 3.030 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.038 | 0.910 |
Number of reflections | 18895 | 1235 |
<I/σ(I)> | 10.3 | |
Completeness [%] | 98.5 | 99 |
Redundancy | 2.3 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 1.6 M Ammonium Citrate, 3.0% Glycerol, 4% Acetone |