6E7L
Structure of a dimerized UUCG motif
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 42.041, 42.041, 77.860 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.993 - 2.590 |
R-factor | 0.1792 |
Rwork | 0.176 |
R-free | 0.21020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | ideal A-form RNA single stranded |
RMSD bond length | 0.012 |
RMSD bond angle | 1.940 |
Data reduction software | XDS (20180409) |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.13-2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.860 | 2.710 |
High resolution limit [Å] | 2.590 | 2.590 |
Rpim | 0.022 | 0.593 |
Number of reflections | 2473 | 294 |
<I/σ(I)> | 20 | 1.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 23.7 | 25.3 |
CC(1/2) | 1.000 | 0.530 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 289 | 20 mM bis-tris pH 6.5 100 mM sodium HEPES pH 7.4 20 % PEG 3,350 20 % glycerol 10 % MPD |