6E6G
KRAS G13D bound to GDP (K13GDP)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 173.15 |
Detector technology | IMAGE PLATE |
Collection date | 2014-08-27 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.096, 37.829, 100.171 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.000 - 1.930 |
Rwork | 0.165 |
R-free | 0.22500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k8y |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.960 |
High resolution limit [Å] | 1.930 | 5.240 | 1.930 |
Rmerge | 0.101 | 0.049 | 0.394 |
Rmeas | 0.111 | 0.054 | 0.463 |
Rpim | 0.044 | 0.021 | 0.235 |
Total number of observations | 63590 | ||
Number of reflections | 10737 | 622 | 449 |
<I/σ(I)> | 6.4 | ||
Completeness [%] | 99.0 | 99.8 | 87.9 |
Redundancy | 5.9 | 5.8 | 3.1 |
CC(1/2) | 0.999 | 0.796 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 291.15 | 27.5% PEG 3350, 125 mM Na(OAc), 122 mM sodium citrate, 4.0% stabilization buffer (20 mM HEPES, 50 mM NaCl, 20 mM MgCl2, at pH 7.5), Crystals grown in 1uL by 1uL drops of mother liquor to protein (18 mg/mL), No cryoprotectant used for diffraction |