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6E47

Crystal Structure of the Murine Norovirus VP1 P domain in complex with the CD300lf Receptor and Glycochenodeoxycholic Acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]100
Detector technologyCMOS
Collection date2017-10-02
DetectorNOIR-1
Wavelength(s)1.00004
Spacegroup nameP 21 21 21
Unit cell lengths49.105, 134.824, 139.592
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution60.700 - 1.950
R-factor0.2109
Rwork0.208
R-free0.25710
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB entries 3LQ6 & 5FFL
RMSD bond length0.007
RMSD bond angle0.612
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]60.7002.020
High resolution limit [Å]1.9501.950
Rmerge0.244
Number of reflections673881306
<I/σ(I)>6.48
Completeness [%]87.0
Redundancy5.8
CC(1/2)0.9910.046
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.72930.1 M Tris, pH 8.7, 0.11 M magnesium chloride, 11% PEG10000, 100 uM sodium glycochenodeoxycholate

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