6E46
CRYSTAL STRUCTURE OF HUMAN INDOLEAMINE 2,3-DIOXYGENASE 1 (IDO1) in complex with ferrous heme and tryptophan
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 79.916, 197.189, 115.016 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.297 - 2.090 |
R-factor | 0.2095 |
Rwork | 0.207 |
R-free | 0.24740 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.035 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.297 | 49.297 | 2.210 |
High resolution limit [Å] | 2.090 | 6.230 | 2.090 |
Rmerge | 0.091 | 0.042 | 0.797 |
Rmeas | 0.102 | 0.047 | 0.887 |
Total number of observations | 536616 | ||
Number of reflections | 108099 | 4378 | 17077 |
<I/σ(I)> | 9.22 | 26.01 | 1.55 |
Completeness [%] | 99.6 | 99.4 | 98.3 |
Redundancy | 4.964 | 4.786 | 5.117 |
CC(1/2) | 0.998 | 0.998 | 0.790 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 6.2 | 298 | 0.1 M phosphate (pH 6.2), and 15% (w/v) PEG3350 |