6DZH
HRAS G13D bound to GDP (H13GDP)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-11-25 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.571, 71.410, 94.861 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.700 - 1.950 |
Rwork | 0.163 |
R-free | 0.21800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6e6p |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX (1.11.1_2575) |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.980 |
High resolution limit [Å] | 1.950 | 5.290 | 1.950 |
Rmerge | 0.092 | 0.036 | 0.596 |
Rmeas | 0.100 | 0.039 | 0.695 |
Rpim | 0.037 | 0.014 | 0.345 |
Total number of observations | 175531 | ||
Number of reflections | 25256 | 1696 | 713 |
<I/σ(I)> | 8.1 | ||
Completeness [%] | 82.0 | 99.7 | 47.3 |
Redundancy | 6.5 | 7.4 | 3.2 |
CC(1/2) | 0.999 | 0.689 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291.15 | 5.9% stabilization buffer (20 mM HEPES, 50 mM NaCl, 20 mM MgCl2, pH 7.5) 188.2 mM Calcium Acetate 18.8% PEG 3350 Crystals were grown in 2uL by 2uL drops of mother liquor to protein (7.7mg/mL) Cryoprotectant for crystal diffraction: 70% mother liquor and 30% glycerol |