6DZ8
Crystal structure of S. aureus penicillin binding protein 4 (PBP4) mutant (S75C)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-16 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 104.511, 89.730, 77.489 |
Unit cell angles | 90.00, 98.09, 90.00 |
Refinement procedure
Resolution | 29.155 - 1.860 |
R-factor | 0.1767 |
Rwork | 0.175 |
R-free | 0.21700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5txi |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.160 | 29.160 | 1.900 |
High resolution limit [Å] | 1.860 | 8.920 | 1.860 |
Rmerge | 0.104 | 0.030 | 1.086 |
Rmeas | 0.124 | 0.036 | 1.301 |
Rpim | 0.066 | 0.019 | 0.710 |
Total number of observations | 200133 | 1882 | 12324 |
Number of reflections | 59159 | 547 | 3786 |
<I/σ(I)> | 7.6 | 23.5 | 1.2 |
Completeness [%] | 99.6 | 96.8 | 99.6 |
Redundancy | 3.4 | 3.4 | 3.3 |
CC(1/2) | 0.997 | 0.999 | 0.502 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 296 | 8 mM zinc chloride, 80 mM sodium acetate pH 5, 100 mM sodium fluoride, and 16% polyethylene glycol 6000 |