6DTI
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 277 |
Detector technology | CCD |
Collection date | 2010-08-17 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 404.540, 404.540, 176.620 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.343 - 3.540 |
R-factor | 0.1969 |
Rwork | 0.197 |
R-free | 0.23570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xnr |
RMSD bond length | 0.005 |
RMSD bond angle | 0.855 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX (1.8.4_1496) |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.343 | 3.670 |
High resolution limit [Å] | 3.540 | 3.540 |
Rmerge | 0.073 | 0.754 |
Number of reflections | 171713 | 17375 |
<I/σ(I)> | 12.42 | 1.51 |
Completeness [%] | 97.1 | |
Redundancy | 2.9 | |
CC(1/2) | 0.992 | 0.526 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | MPD, NH4Cl, KCl, CaCl2, magnesium acetate, sodium cacodylate, pH 6.5 VAPOR DIFFUSION, HANGING DROP, temperature 277K, temperature 277.0K |