6DSZ
Crystal structure of DDB1 in complex with DET1- and DDB1-associated protein 1 (DDA1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 155 |
Detector technology | CCD |
Collection date | 2015-02-24 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 63.196, 219.175, 89.317 |
Unit cell angles | 90.00, 89.98, 90.00 |
Refinement procedure
Resolution | 47.796 - 3.093 |
R-factor | 0.2501 |
Rwork | 0.247 |
R-free | 0.30710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2b5m |
RMSD bond length | 0.004 |
RMSD bond angle | 0.773 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.800 | 3.200 |
High resolution limit [Å] | 3.093 | 3.100 |
Rmeas | 0.151 | 0.151 |
Rpim | 0.064 | 0.373 |
Number of reflections | 40025 | 2174 |
<I/σ(I)> | 10.29 | |
Completeness [%] | 89.0 | |
Redundancy | 2.7 | 2.7 |
CC(1/2) | 0.990 | 0.746 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1 M MES monohydrate, pH 6.5, 20% (w/v) PEG4000, 180 mM NaCl, 5 mM DTT |