6DQ4
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR GSK-J1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-03-11 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 1.00000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 118.108, 62.144, 46.800 |
Unit cell angles | 90.00, 92.62, 90.00 |
Refinement procedure
Resolution | 33.232 - 1.392 |
R-factor | 0.1841 |
Rwork | 0.183 |
R-free | 0.21620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ivb |
RMSD bond length | 0.002 |
RMSD bond angle | 0.591 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.232 | 1.440 |
High resolution limit [Å] | 1.390 | 1.390 |
Rmerge | 0.132 | 0.775 |
Rpim | 0.051 | 0.605 |
Number of reflections | 58786 | 2045 |
<I/σ(I)> | 13.2 | 1.3 |
Completeness [%] | 86.9 | 30.3 |
Redundancy | 6.7 | 1.6 |
CC(1/2) | 0.488 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 1.2-1.35 M (NH4)2SO4, 0.1 M Tris-HCl (pH 8.6-9.2) 0-20% glycerol 25 mM (Na/K) dibasic/monobasic phosphate |