6DO4
KLHDC2 ubiquitin ligase in complex with SelS C-end degron
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-01 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.637, 88.596, 88.824 |
Unit cell angles | 90.00, 104.77, 90.00 |
Refinement procedure
Resolution | 39.370 - 2.200 |
R-factor | 0.1697 |
Rwork | 0.167 |
R-free | 0.21600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vpj |
RMSD bond length | 0.007 |
RMSD bond angle | 0.894 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.200 | 5.970 | 2.200 |
Rmerge | 0.138 | 0.057 | 0.592 |
Rmeas | 0.156 | 0.064 | 0.702 |
Rpim | 0.073 | 0.030 | 0.369 |
Number of reflections | 33761 | 1755 | 1576 |
<I/σ(I)> | 5.9 | ||
Completeness [%] | 99.3 | 99.8 | 93 |
Redundancy | 4.5 | 4.7 | 3.3 |
CC(1/2) | 0.996 | 0.665 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298.15 | 0.03M MgCl2*6H2O, 0.03M CaCl2*2H2O, 0.05M Imidazole, 0.05M MES monohydrate, 13.25% v/v MPD, 13.25% PEG1000, 13.25% w/v PEG3350, pH 6.8. |