6DGP
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with TRAP220 Coactivator Peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 200 |
Detector technology | IMAGE PLATE |
Collection date | 2018-04-11 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 88.090, 54.730, 123.471 |
Unit cell angles | 90.00, 90.05, 90.00 |
Refinement procedure
Resolution | 44.045 - 3.100 |
R-factor | 0.2293 |
Rwork | 0.222 |
R-free | 0.29390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1prg |
RMSD bond length | 0.010 |
RMSD bond angle | 1.282 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.040 | 3.211 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.366 | |
Rmeas | 0.518 | |
Number of reflections | 10895 | 1082 |
<I/σ(I)> | 11.31 | 2.05 |
Completeness [%] | 99.8 | 99.18 |
Redundancy | 2 | 1.9 |
CC(1/2) | 0.998 | 0.718 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1M Magnesium acetate, 0.1M Sodium cacodylate, pH 6.5 15% w/v, PEG 6000 |