6DG3
LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase, in complex with caesium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-24 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97856 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 152.371, 154.161, 328.864 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.910 - 2.944 |
R-factor | 0.2002 |
Rwork | 0.196 |
R-free | 0.27430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5udq |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (dev-3092) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.910 | 48.910 | 3.000 |
High resolution limit [Å] | 2.940 | 15.300 | 2.940 |
Rmerge | 0.112 | 0.040 | 0.470 |
Rmeas | 0.123 | 0.045 | 0.514 |
Rpim | 0.049 | 0.021 | 0.205 |
Number of reflections | 81489 | 627 | 4232 |
<I/σ(I)> | 14.8 | ||
Completeness [%] | 99.3 | 95.6 | 95 |
Redundancy | 6.2 | 4.4 | 6 |
CC(1/2) | 0.995 | 0.997 | 0.876 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294.15 | 5 ul ~27 mg/ml LarE (100 mM Tris-HCl pH 7.5, 300 mM NaCl) mixed with 1 ul 1 M cesium chloride and 4 ul of reservoir solution. Hanging drop reservoir contained 100 ul of 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 100 mM ammonium sulfate. |