6DFI
Crystal structure of anti-Zika antibody Z021 bound to Zika virus envelope protein DIII
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.881, 105.622, 107.240 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 75.250 - 2.480 |
R-factor | 0.1842 |
Rwork | 0.182 |
R-free | 0.22850 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.910 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.250 | 2.570 |
High resolution limit [Å] | 2.480 | 2.480 |
Rmerge | 0.091 | 0.486 |
Rpim | 0.077 | 0.418 |
Number of reflections | 30524 | 3427 |
<I/σ(I)> | 7.8 | 2.2 |
Completeness [%] | 99.7 | 99.9 |
Redundancy | 3.7 | 3.7 |
CC(1/2) | 0.993 | 0.696 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | 0.1M HEPES pH 7.0, 29% PEG 1000 |